Isolation of endophytic bacteria and evaluation of fermented avicennia marina fruit filtrate as natural antimicrobials against staphylococcus aureus
DOI:
https://doi.org/10.30862/accej.v9i1.1318Keywords:
Antimicrobial, avicennia marina, fermentation, mangrove, staphylococcus aureusAbstract
Antimicrobial resistance (AMR) has become a major global health challenge, necessitating the exploration of alternative antimicrobial sources from natural products. This study aimed to determine the optimum fermentation time, characterize the colony morphology and Gram-staining characteristics of endophytic bacterial isolates, and evaluate their antimicrobial activity against Staphylococcus aureus. This study employed a quantitative laboratory experimental approach. Endophytic bacteria were isolated from Avicennia marina fruit through serial dilution and characterized based on colony morphology and Gram-staining characteristics. Antimicrobial activity was evaluated using the disk diffusion method. Five endophytic bacterial isolates (AM41–AM45) were successfully obtained, consisting of three Gram-positive and two Gram-negative isolates. Among them, isolate AM41 exhibited the highest inhibitory activity against S. aureus (19.71 mm), followed by AM45 (8.83 mm) and AM42 (8.00 mm), whereas the remaining isolates showed no inhibitory activity. Differences in antimicrobial activity were observed among the fermentation times tested. The largest inhibition zone was recorded after 72 h of fermentation (21.67 mm), followed by 96 h (20.07 mm), while shorter fermentation periods produced lower inhibitory activity. These findings indicate that endophytic bacterial isolates and fermented filtrates of A. marina fruit possess antimicrobial potential against S. aureus. Under the conditions tested, the highest antimicrobial activity of the fermented filtrate was observed after 72 h of fermentation
References
Annas, Z. F., Muliasari, H., Deccati, R. F., Permatasari, L., & Mukhlishah, N. R. I. (2023). Determination of total flavonoid content of extract and fractions of mangrove leaves (Avicennia marina). Jurnal Agrotek Ummat, 10(3). https://doi.org/10.31764/jau.v10i3.16596
Amelia, P., Ayunda, R., & Bahri, S. (2021). Screening of Antibacterial Activities of the Endophytic Fungi Isolated from the Leaves of Medinilla speciosa Blume. Jurnal Fitofarmaka Indonesia, 8(3), 24–28. https://doi.org/10.33096/jffi.v8i3.729
Beiranvand, M., Amin, M., Hashemi-shahraki, A., & Romani, B. (2017). Antimicrobial activity of endophytic bacterial populations isolated from medical plants of Iran. 9(1), 11–18.
Carroll, A. R., Copp, B. R., Davis, R. A., Keyzers, R. A., & Prinsep, M. R. (2019). Marine natural products. Natural product reports, 36(1), 122-173. https://doi.org/10.1039/c8np00092a
Cerri, F., Giustra, M., Anadol, Y., Tomaino, G., Galli, P., Labra, M., Campone, L., & Colombo, M. (2022). Natural Products from Mangroves: An Overview of the Anticancer Potential of Avicennia marina. Pharmaceutics, 14(12), 2793. https://doi.org/10.3390/pharmaceutics14122793
Handayani, N., Sabdaningsih, A., Jati, O. E., & Ayuningrum, D. (2023). Isolasi dan Karakterisasi Bakteri Endofit dari Akar Avicennia marina di Kawasan Mangrove Pantai Tirang, Semarang. Jurnal Pasir Laut, 7(2), 68-73. https://doi.org/10.14710/jpl.2023.59064
Hidayati, W., Yuniarti, F., Shofaya, L., Utomo, S. P., & Munaziah, L. (2017). Screening And Identification Endophytic Bacteria From Indonesian Bay Leaves (Eugenia polyantha Wight) With Antibacteria Activity. Proceeding Kolok UHAMKA [Internet], 1(2), 167-76.
Hyeon, S., Jeong, L., Lim, M., Won, S., Tae, L., Jang, H., Hee, J., Young, P., & Seo, S. (2023). Effect of fermentation on antioxidant , antimicrobial , anti ‑ inflammatory , and anti ‑ Helicobacter pylori adhesion activity of Ulmus davidiana var . japonica root bark. Food Science and Biotechnology, 32(9), 1257–1268. https://doi.org/10.1007/s10068-023-01259-4
Juma, I. (2025). Morphological and biochemical characterization of endophytic bacteria from selected medicinal plants found at the University of Dar es Salaam, Tanzania. Tanzania Journal of Science, 51(3), 19. https://doi.org/10.65085/2507-7961.1064
Kumari, P., Rani, B., & Sharma, A. (2021). A review on potential bioactive phytochemicals for novel therapeutic applications with special emphasis on mangrove species. Phytomedicine Plus, 1(4), 100107. https://doi.org/10.1016/j.phyplu.2021.100107
Lee, A. S., De Lencastre, H., Garau, J., Kluytmans, J., Malhotra-Kumar, S., Peschel, A., & Harbarth, S. (2018). Methicillin-resistant Staphylococcus aureus. Nature reviews Disease primers, 4(1), 18033. https://doi.org/10.1038/nrdp.2018.33
Marco, M. L., Heeney, D., Binda, S., Cifelli, C. J., Cotter, P. D., Foligné, B., Gänzle, M., Kort, R., Pasin, G., Pihlanto, A., Smid, E. J., & Hutkins, R. (2017). Health benefits of fermented foods: microbiota and beyond. Current opinion in biotechnology, 44, 94-102. https://doi.org/https://doi.org/10.1016/j.copbio.2016.11.010
Marino, A., Maniaci, A., Lentini, M., Ronsivalle, S., Nunnari, G., Cocuzza, S., Parisi, F. M., Cacopardo, B., Lavalle, S., & Via, L. La. (2025). The global burden of multidrug-resistant bacteria. Epidemiologia, 6(2), 21. https://doi.org/10.3390/epidemiologia6020021
Ramadhanty, M. A., Lunggani, A. T., & Nurhayati, N. (2021). Isolasi bakteri endofit asal tumbuhan mangrove Avicennia marina dan kemampuannya sebagai antimikroba patogen Staphylococcus aureus dan Salmonella typhi secara in vitro. NICHE Journal of Tropical Biology, 4(1), 16-22.
Rather, I. A., Kim, B. C., Bajpai, V. K., & Park, Y. H. (2017). Self-medication and antibiotic resistance: Crisis, current challenges, and prevention. Saudi journal of biological sciences, 24(4), 808-812. https://doi.org/10.1016/j.sjbs.2017.01.004
Rozirwan, R., Muhtadi, M., Ulqodry, T. Z., Nugroho, R. Y., Khotimah, N. N., Fauziyah, F., Putri, W. A. E., Aryawati, R., & Mohamed, C. A. R. (2023). Insecticidal Activity and Phytochemical Profiles of Avicennia marina and Excoecaria agallocha Leaves Extracts. ILMU KELAUTAN: Indonesian Journal of Marine Sciences, 28(2), 148–160. https://doi.org/10.14710/ik.ijms.28.2.148-160
Rusmalina, S., Hasanah, N., & Wiyono, M. A. (2024). The optimation of fermentation time , antibacterial activity , and profiling secondary metabolite of symbiont fungi from Sponge Gelliodes fibulata. 14(2), 242–250. https://doi.org/10.12928/pharmaciana.v14i2.27137
Sukarno, Laksmita, F. T., Budjianto, S., Rahmawati, S. I., Harmoko, R., Izzti, F. N., Bachri, S., Anidah, Nelanda, S. I., Yusmur, A., Asian, & Ilman, M. (2022). Antibacterial activity profile of mangrove endophytic fungi isolated from berau regency, Indonesia. Jurnal Bioteknologi & Biosains Indonesia (JBBI), 9(1), 86-99. https://doi.org/10.55981/jbbi.2022.1789
Swain, M. R., Anandharaj, M., Ray, R. C., & Parveen Rani, R. (2014). Fermented fruits and vegetables of Asia: a potential source of probiotics. Biotechnology research international, 2014(1), 250424. https://doi.org/10.1155/2014/250424
Tacconelli, E., Carrara, E., Savoldi, A., Harbarth, S., Mendelson, M., Monnet, D. L., Pulcini, C., Kahlmeter, G., Kluytmans, J., Carmeli, Y., Ouellette, M., Outterson, K., Patel, J., Cavaleri, M., Cox, E. M., Houchens, C. R., Grayson, M. L., Hansen, P., Singh, N., … Zorzet, A. (2018). Discovery, research, and development of new antibiotics: the WHO priority list of antibiotic-resistant bacteria and tuberculosis. The Lancet infectious diseases, 18(3), 318-327. https://doi.org/https://doi.org/10.1016/S1473-3099(17)30753-3
Tangapo, A. M., Mambu, S. M., Kolondam, B., Pasappa, N., & Pelealu, J. (2022). Eksplorasi Fungi Endofit Tumbuhan Mangrove Avicennia marina sebagai Penghasil Senyawa Antibakteri. Jurnal Ilmu Alam Dan Lingkungan, 13(2), 25-31.
Trivedi, N. S., & Thumar, J. T. (2023). Characterization and antibacterial activity of endophytic fungi isolated from Avicennia marina. Vegetos, 36(1), 163-172. https://doi.org/10.1007/s42535-023-00582-9
Tong, S. Y., Davis, J. S., Eichenberger, E., Holland, T. L., & Fowler Jr, V. G. (2015). Staphylococcus aureus infections: epidemiology, pathophysiology, clinical manifestations, and management. Clinical microbiology reviews, 28(3), 603-661. https://doi.org/10.1128/CMR.00134-14
Utami, A. P., Jagad, N. J., Ramanda, G. D., & Khairillah, Y. N. (2025). Isolasi Bakteri Endofit dari Tanaman Keladi Merah (Caladium bicolor L.) sebagai Potensi Aktivitas Antimikroba. Sainteks, 22(1), 13-21. https://doi.org/10.30595/sainteks.v22i1.25819
Ventola, C. L. (2015). The antibiotic resistance crisis: part 1: causes and threats. Pharmacy and therapeutics, 40(4), 277.
World Health Organization (WHO). (2022). Global antimicrobial resistance and use surveillance system (GLASS) report 2022. World Health Organization.
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